PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 240aa    MW: 26659.9 Da    PI: 7.056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1755103254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a++  + + +
  Vang01g05080.1  55 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDLHAHRHH 103
                     59****999.**********954...5********************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-245596No hitNo description
SuperFamilySSF541713.6E-1755105IPR016177DNA-binding domain
SMARTSM003803.2E-2355121IPR001471AP2/ERF domain
PfamPF008478.6E-1255100IPR001471AP2/ERF domain
PROSITE profilePS5103219.86255115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2355102IPR001471AP2/ERF domain
PRINTSPR003671.5E-105667IPR001471AP2/ERF domain
PRINTSPR003671.5E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MASLQPQPQD TKPTVTTATP STPSLTSITS NHTTINNNTA RKCKGKGGPD NNKFRYRGVR  60
QRSWGKWVAE IREPRKRTRK WLGTFATAED AARAYDLHAH RHHHHRRPEE VVQVPHALST  120
SYPKSESDVS LDGNNTTVNS SSRSTSYQRH GFQDNNRLHV QHDHSSNHQQ HQKGDVDGVD  180
SVVGSAEGSQ ANMEASEDPD LSLVGTVGLG SSSSLWPLAS EDDYTDNLWD YNDPFFFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1456106354ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504327.15e-77PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A0L9UVU29e-90A0A0L9UVU2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKG29e-90A0A0S3RKG2_PHAAN; Uncharacterized protein
STRINGGLYMA02G43240.26e-29(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.19e-27ERF family protein